rs222742374 SNP Detail

Summary

• ID
  rs222742374
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115875868 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTCCCTGAG TTGCTTCACC TTTGAATCAT ATCACATGGG
  TGGTAATTAC GTATACCTTA GAGGAGTGTC AGGAGCCTGT GAGGTTCCAT CATTAAAGCC
  W
  CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CACACACACA CACACACACA CACACACACA CACACAAGC                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321276778	CHEV_4_115691276	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222742374					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115875868 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	468 bp distal
Faah	fatty acid amide hydrolase	within coordinates
Rr91643	regulatory region 91643	1533 bp proximal
Rr99792	regulatory region 99792	267 bp distal
Tssr38489	transcription start site region 38489	1388 bp downstream
Tssr42842	transcription start site region 42842	907 bp upstream
Tssr42843	transcription start site region 42843	808 bp upstream
Tssr42844	transcription start site region 42844	637 bp upstream
Tssr42845	transcription start site region 42845	608 bp upstream
Tssr42846	transcription start site region 42846	571 bp upstream
Tssr42847	transcription start site region 42847	540 bp upstream
Tssr42848	transcription start site region 42848	524 bp upstream
Tssr42849	transcription start site region 42849	495 bp upstream