rs222748106 SNP Detail

Summary

• ID
  rs222748106
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:89531566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCATGGCTT CCAGCCCTGA CACCTGCTGG
  GTCTGAGTAC CAAGCATCCT CCTGAGCACG ATGACTGACT TGACCTTGAA TGTGTTGTGG
  GGGACTTTGC TTTTTGGACA GCTTAAGAGG TAACAGGAGT CAGCATTTGA GGAAGATTAA
  Y
  GAGTGAGCTA TATTGGAAAG AGACATGAAA CCTGTGACTG GCTTGCAGTA GGTACTGACT
  ACCTCAGGCT ATCGTTTCTG ATAGGCGGTG GCACACGGGA AACGTGAAAA TCCTGTGAGC
  CAAAGCGGGA TATTGGGTGT GAGGTGGAGA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319834394	CHEV_1_91500419	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222748106					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:89531566 () rs orientation: forward

Symbol	Name	Function Class
Agap1	ArfGAP with GTPase domain, ankyrin repeat and PH domain 1	within coordinates
Rr23524	regulatory region 23524	835 bp proximal
Rr35151	regulatory region 35151	within coordinates
Tssr8003	transcription start site region 8003	584 bp downstream