rs222757366 SNP Detail

Summary

• ID
  rs222757366
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:37655409 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGATAGGAT GTCTGGTTGG
  AGGTATGGAA AATAAAGCTT CAAACGTGCC TTGGACCTTA GTGCGGTTCT ACATGCTTGG
  AATCCCAGTA TTTTGGAAGG AGAAACAGGA TTGCCAGTTT GAGTTCAAGA CCAGCCCAGG
  CTATATAACA AGAGCCTATA TAACAATGTT TGTTCTACCA AACTTTGAAG TCTACAACTT
  K
  GGAAACGGCA CACAGCAAGG CTAAGCAAGC GAGGCTTTCC TACTCAGAAC TGACAGCCTT
  GTGGCTGGAG TAGGAGCAGC CTTGCGTGGT AAACAAGAAG GCTGCAAATA AACCACTCCT
  TTGTGTCCCC AAAAGCCCTT GAAATGCAAG TTTTCCTGGA AAGGTTGCGC ACCTTGGCTC
  AAACTTGTAA TCCCAGCATT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403285887	MGP_WTSI_X_35919709	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222757366					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403285887	MGP_WTSI_X_35919709	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:37655409 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22681	CpG island 22681	1444 bp distal
Cul4b	cullin 4B	within coordinates
Rr3993	regulatory region 3993	1192 bp proximal
Rr8561	regulatory region 8561	408 bp distal
Rr394940	regulatory region 394940	within coordinates
Tssr163217	transcription start site region 163217	1977 bp upstream
Tssr163218	transcription start site region 163218	1861 bp upstream
Tssr163219	transcription start site region 163219	1637 bp upstream
Tssr163220	transcription start site region 163220	1598 bp upstream
Tssr163221	transcription start site region 163221	1570 bp upstream
Tssr163222	transcription start site region 163222	1508 bp upstream
Tssr163223	transcription start site region 163223	1485 bp upstream
Tssr163224	transcription start site region 163224	56 bp downstream