rs222758472 SNP Detail

Summary

• ID
  rs222758472
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36919439 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTCGCGAC GCTCACCCAC
  CGAGGGGCAT CTATACCAGG CATAGAGACA CCTATTTTAG GGGGTTGGAA AGGCTGTCGG
  GCAAGAAGCC TAGGCTAGGG TAAATTTCGG TTTCTTGTGG TTTACAAACT CTTCGCGCTT
  TAGGAAATTT CCAAGGCAAG CTCTGGTGTA CAACTCCTTT CTGGGGCCTC CTGAAGTCAT
  Y
  TGTAGGGTCA CACTGACATG TTGATACACG CACCCACGTC CATCACGTAC ACACCCAGAC
  CCACACACAC CTGCGCTCTT TATTTTATTT TTTGATGATC CAGCACTGAC TGCAGTAAAG
  AAATATCTCT TCAGCTGCGT TCGTGCAAGG TCCTGTAGTG GATCGTGTAA GATGGAAAAA
  TAATCAGGGC TACTTCTTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388276813	MGP_WTSI_13_36827334	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222758472					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388276813	MGP_WTSI_13_36827334	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36919439 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5451	CpG island 5451	10 bp distal
Cpgi5452	CpG island 5452	450 bp proximal
Gm56572	predicted gene, 56572	within coordinates
Nrn1	neuritin 1	988 bp upstream
Rr477394	regulatory region 477394	999 bp distal
Rr477395	regulatory region 477395	567 bp distal
Rr477396	regulatory region 477396	within coordinates
Tssr119271	transcription start site region 119271	598 bp downstream
Tssr122097	transcription start site region 122097	1190 bp upstream
Tssr122098	transcription start site region 122098	1157 bp upstream
Tssr122099	transcription start site region 122099	1080 bp upstream
Tssr122100	transcription start site region 122100	1050 bp upstream
Tssr122101	transcription start site region 122101	1018 bp upstream
Tssr122102	transcription start site region 122102	973 bp upstream