rs222764711 SNP Detail

Summary

• ID
  rs222764711
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:75563878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CACCACAGCA ATGACTCCAT CTACCATGAG GCCGCGGGGC
  GGATTTTACT CAGGCCAGTG AGGGAAGACT CGGCCTCCCC ACGCACGAAG GCCCAACAAA
  Y
  CAGGCTTTGT TGTGGGAGCA GCGTCTGGGA AAGGCCAGAG TTTGTCATTC ATCAAACCCA
  AAACGCTGCG AGCTTACTCG CGGTTAAAAA AAAAAAAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325251668	CHEV_16_75767235	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222764711					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:75563878 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8370	CpG island 8370	within coordinates
Hspa13	heat shock protein 70 family, member 13	within coordinates
Rr319131	regulatory region 319131	1678 bp distal
Rr325470	regulatory region 325470	within coordinates
Rr404916	regulatory region 404916	24 bp upstream
Rr404917	regulatory region 404917	922 bp upstream
Tssr141799	transcription start site region 141799	193 bp upstream
Tssr141800	transcription start site region 141800	83 bp downstream