rs222769041 SNP Detail

Summary

• ID
  rs222769041
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:105117560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGGA ACAACGGCTC ATCACAAACT
  R
  TGTGCTGAGT GGCACAGAAA GCAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321243333	CHEV_4_104932968	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222769041					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:105117560 () rs orientation: forward

Symbol	Name	Function Class
Gm54244	predicted gene, 54244	912 bp upstream
Rr596570	regulatory region 596570	1939 bp distal
Rr596571	regulatory region 596571	126 bp proximal
Rr596572	regulatory region 596572	542 bp proximal
Rr596573	regulatory region 596573	1914 bp proximal
Tssr38160	transcription start site region 38160	1804 bp downstream
Tssr38161	transcription start site region 38161	1741 bp downstream
Tssr38162	transcription start site region 38162	986 bp upstream