rs222771085 SNP Detail

Summary

• ID
  rs222771085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77440594 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCACTTGGTA ACAGATGCCC
  TCAGCCACAG ACCCTCAGGT TTGATTCTTG TATCCTATAA ACTGTTAATA CAACACTTTA
  TAATGCTTGG CATCTTAGAG CTGGTGGTAC ACTGTGGTCT GAACACTGCC TGCCCCGAGT
  CACTCACAGC TAATAGTGGA GGGAAGGTGT GCTCTGATCT CCAACAACTG CTTCAGTCAG
  Y
  CTGGTTTCTG GAGTCCTGTC TCCCAGTTAC ACAGTCTGAG CTGGACATTC CAGAGATATG
  TTCAGCTAAG GATGACCATG ATCTGTATTT GAGGAAAATC CATACCTTGG TCTGGTCTGG
  GTGTGGGATG AGTTCCAAAT GCGTCCTTGT GGAAGACCTT GACAAACTTC TCGAAGAAAG
  GTCATGTGTA CAGGGGAAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380971314	MGP_WTSI_10_77067505	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222771085					SNP	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380971314	MGP_WTSI_10_77067505	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77440594 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1760	CpG island 1760	770 bp proximal
D10Jhu54	DNA segment, Chr 10, Johns Hopkins University 54	within coordinates
Gm49325	predicted gene, 49325	1437 bp upstream
Rr384959	regulatory region 384959	822 bp downstream
Rr402005	regulatory region 402005	1656 bp upstream
Rr434545	regulatory region 434545	497 bp distal
Rr434546	regulatory region 434546	847 bp proximal
Rr434547	regulatory region 434547	1822 bp proximal
Sumo3	small ubiquitin-like modifier 3	1337 bp upstream
Tssr94265	transcription start site region 94265	1284 bp upstream
Tssr94266	transcription start site region 94266	1457 bp upstream
Tssr94267	transcription start site region 94267	1484 bp upstream
Tssr94268	transcription start site region 94268	1818 bp upstream
Tssr94269	transcription start site region 94269	1901 bp upstream
Tssr94270	transcription start site region 94270	1935 bp upstream