rs222779885 SNP Detail

Summary

• ID
  rs222779885
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:59788818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATACCTGG GATCTCAAGA
  TTTAGGGGAT GAAGGCAGCA AAGTCAATTC AAGGCCTTAG CTGCACAGTG AGTTCCGAGG
  TCAACCAGGC TACACGAGAG CTTATCTCAA AAAGCAAAAC AAAAAAGTGT CAGCCCTGGA
  TTCCTGACAT CGCCAGAAAG AGTGGCTTCA GAACAGCTTG GAACTTGTGT TTTGATCTCC
  T
  CTACAGATCA GGGGCTTTGG GGCTGCAGGT CATCTTCAGA TTAAACAACA GGGAAGTGCC
  CGGTGTGGTG GTGAATGCCT TTAATCCTAG CACTCAGCAG AGACAGGTAG ATTTCAGTGA
  GTTTGAAGCC AGCTTGGTTT ACATACAGAG TTTCAGGATA GCTAGAGCTA CATTATAGAG
  AGATCCTTGT CTCAAGACTA                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324357478	CHEV_13_59742365	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222779885					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:59788818 () rs orientation: forward

Symbol	Name	Function Class
Golm1	golgi membrane protein 1	within coordinates
Tssr4093	transcription start site region 4093	767 bp upstream
Tssr122874	transcription start site region 122874	832 bp upstream
Tssr122875	transcription start site region 122875	815 bp upstream