rs222781443 SNP Detail

Summary

• ID
  rs222781443
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79417194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCG AACCAGGGTC CTCTTGAAGA
  A
  CAGTCAGTGC TCTCCTCTCT TCTGA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323760127	CHEV_11_79339870	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222781443					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79417194 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm165	DNA segment, Chr 11, Boehm 165	456 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2a	ecotropic viral integration site 2a	192 bp downstream
Nf1	neurofibromin 1	within coordinates
Rr402775	regulatory region 402775	580 bp upstream
Tssr103449	transcription start site region 103449	1764 bp upstream
Tssr103450	transcription start site region 103450	1810 bp upstream
Tssr103451	transcription start site region 103451	1835 bp upstream
Tssr109509	transcription start site region 109509	1987 bp upstream
Tssr109510	transcription start site region 109510	515 bp upstream
Tssr109511	transcription start site region 109511	1306 bp downstream