rs222782449 SNP Detail

Summary

• ID
  rs222782449
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19429213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAACTCACT CTCCATACAC
  TTGCTGGGAA AGTCAAAAGG CATGCAGCAC AGGCAGGGGA GAAAGAATGG GGCTAAGGCC
  CCATGACCCA GAGGGAGCAA AGATCCAGCT AACTTCAGAG CAAGGGAGAA AGGCTGAGGT
  TCCAAAAGCC ACGTAGAAAC CGTAGAAACC GCCAACCAAA GGCCCAGAGC AAAAGAAACC
  K
  CGGGAGGGTG AGATAACAGA GGATCAGGAA AACAGGAAGC CAGAAAAGGA AGCCTAGAAG
  GGAAAAAGAG GAGAGACAAG GCAAGGAGAG GGTGTCAGAT AAGACTAGAG CGGAGGAGGA
  GAGATAAGAC AACCAGAAAA GTAAACACCG CCTGGCGACC CTGGTCTCTT ACATGTTGAT
  TGATTCAAGG CATAGCTGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754775	MGP_WTSI_7_20280637	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	T	G	G	G	T	G	T	T	G	T	G	T	G	T	G	G	T	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222782449					SNP	T	T	T	G	G	G	G	G	T	G	T	G	G	G	G	G	G	G	G	T	G	T	G	G	G	G	T	G	G	G	T	G	T	T	G	T	G	T	G	T	G	G	T	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754775	MGP_WTSI_7_20280637	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19429213 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	821 bp downstream
Cpgi18507	CpG island 18507	1233 bp proximal
Gm71725	predicted gene, 71725	1830 bp upstream
Rr155346	regulatory region 155346	788 bp proximal
Rr167193	regulatory region 167193	1612 bp distal
Rr167194	regulatory region 167194	1187 bp proximal
Tssr2112	transcription start site region 2112	1163 bp upstream
Tssr2113	transcription start site region 2113	1188 bp upstream
Tssr2114	transcription start site region 2114	1303 bp upstream
Tssr2115	transcription start site region 2115	1339 bp upstream
Tssr2116	transcription start site region 2116	1414 bp upstream
Tssr2117	transcription start site region 2117	1436 bp upstream
Tssr2118	transcription start site region 2118	1543 bp upstream
Tssr2119	transcription start site region 2119	1552 bp downstream
Tssr2120	transcription start site region 2120	1615 bp upstream
Tssr2121	transcription start site region 2121	1647 bp upstream
Tssr64880	transcription start site region 64880	980 bp upstream
Tssr64881	transcription start site region 64881	1032 bp upstream
Tssr64882	transcription start site region 64882	1076 bp upstream
Tssr64883	transcription start site region 64883	1114 bp upstream
Tssr64884	transcription start site region 64884	1141 bp upstream
Tssr64885	transcription start site region 64885	1220 bp upstream
Tssr64886	transcription start site region 64886	1241 bp upstream
Tssr64887	transcription start site region 64887	1273 bp upstream
Tssr64888	transcription start site region 64888	1492 bp upstream
Tssr64889	transcription start site region 64889	1586 bp upstream
Tssr64890	transcription start site region 64890	1632 bp upstream
Tssr64891	transcription start site region 64891	1655 bp upstream
Tssr64892	transcription start site region 64892	1688 bp upstream
Tssr64893	transcription start site region 64893	1723 bp upstream
Tssr70973	transcription start site region 70973	1004 bp downstream
Tssr70974	transcription start site region 70974	1050 bp downstream
Tssr70975	transcription start site region 70975	1078 bp downstream
Tssr70976	transcription start site region 70976	1113 bp downstream
Tssr70977	transcription start site region 70977	1161 bp downstream
Tssr70978	transcription start site region 70978	1176 bp downstream
Tssr70979	transcription start site region 70979	1200 bp downstream
Tssr70980	transcription start site region 70980	1210 bp downstream
Tssr70981	transcription start site region 70981	1231 bp downstream
Tssr70982	transcription start site region 70982	1245 bp downstream
Tssr70983	transcription start site region 70983	1278 bp downstream
Tssr70984	transcription start site region 70984	1295 bp downstream
Tssr70985	transcription start site region 70985	1360 bp downstream
Tssr70986	transcription start site region 70986	1393 bp downstream
Tssr70987	transcription start site region 70987	1423 bp downstream
Tssr70988	transcription start site region 70988	1467 bp downstream
Tssr70989	transcription start site region 70989	1506 bp downstream
Tssr70990	transcription start site region 70990	1518 bp downstream
Tssr70991	transcription start site region 70991	1563 bp downstream
Tssr70992	transcription start site region 70992	1571 bp downstream
Tssr70993	transcription start site region 70993	1580 bp downstream
Tssr70994	transcription start site region 70994	1621 bp downstream
Tssr70995	transcription start site region 70995	1626 bp downstream
Tssr70996	transcription start site region 70996	1659 bp downstream
Tssr70997	transcription start site region 70997	1693 bp downstream
Tssr70998	transcription start site region 70998	1755 bp downstream
Tssr70999	transcription start site region 70999	1773 bp downstream