rs222782549 SNP Detail

Summary

• ID
  rs222782549
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:117258994 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGACTTGCG ACGACGGAGT
  GAGTGAGCGA GGAGATCCGC CCCTGATGGG CCGGTGGGAA AAGCAGACGG GACCCAGGGA
  GGGACACTCA GAGGGATTGG GACTGCAGAC TGAGCAGGTT GACTTGAGAG AACTCAGGCA
  GCGGGATGAA AGAAGGGGAC CCTAGAGAGA CCGAGACAGG AAAATAAGCA AAGGAGACTT
  Y
  TGGGGAGGCG AGGGCAGTAG TTCTGAAACT ATGCTCTTGC GATGAGTGTA AAGAGGACCT
  CAGGAAGGCT TAGGGCAGCC GAGTGAAGGG AGGGGTCCCC AAAAGGGTGT GGGCTGAGGG
  ACCCAGAGTA GGGACAGACA GCACTGAGAG TCCAAGGAGA GCCGGTGAGT GAAGTACCAG
  AGAAGAGCTT GCGCAGCGTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366399348	MGP_WTSI_5_117570938	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222782549					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366399348	MGP_WTSI_5_117570938	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:117258994 () rs orientation: forward

Symbol	Name	Function Class
Cpgi16405	CpG island 16405	within coordinates
Gm57263	predicted gene, 57263	886 bp upstream
Rr378521	regulatory region 378521	50 bp upstream
Rr399292	regulatory region 399292	787 bp downstream
Rr618571	regulatory region 618571	1637 bp distal
Rr618572	regulatory region 618572	897 bp distal
Rr618573	regulatory region 618573	790 bp distal
Rr618574	regulatory region 618574	within coordinates
Taok3	TAO kinase 3	Intron
Tssr48350	transcription start site region 48350	749 bp downstream
Tssr48351	transcription start site region 48351	733 bp downstream
Tssr52880	transcription start site region 52880	1032 bp upstream