rs222799377 SNP Detail

Summary

• ID
  rs222799377
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7288949 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgggttca attcctaaga cccacgtggt
  ggtccataac tcacgttcgg ggggggggga tcgatccaat gcccctcttg taacctctgt
  agtcaccagc acgaacacct tacacgcgcg cgcgcgcacg cacacacaca cgcgcgcaca
  S
  acgcacacac acgcacaTTT TACCTTCTTT AAGTACCGGG GGCAGGGGGG AGGGGGGAGT
  TTCCCCGTGT GCTCGTGCAC GCGCGCACGC ACGCACGCGT AGGGAATGTA AGTAAAGCGT
  CTAGACAATA AGGACCTAAA ATGAAAGAGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325887808	CHEV_X_6999836	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222799377					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7288949 () rs orientation: forward

Symbol	Name	Function Class
2010204K13Rik	RIKEN cDNA 2010204K13 gene	within coordinates
Cpgi22567	CpG island 22567	within coordinates
Tssr162784	transcription start site region 162784	1625 bp upstream
Tssr162785	transcription start site region 162785	1589 bp upstream
Tssr162786	transcription start site region 162786	1578 bp upstream
Tssr162787	transcription start site region 162787	220 bp downstream
Tssr162788	transcription start site region 162788	239 bp downstream
Tssr162789	transcription start site region 162789	267 bp downstream