rs222806549 SNP Detail

Summary

• ID
  rs222806549
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129157270 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAACTTTAT ATGCCCCAGT ACAGGAGAAC GCCAGGGCCA
  AAAGTGGGAA TGGGTGGGCA GGGGAGTGGG GGGGGGAGGG TATGGGGGAC TTTTGGAATA
  R
  CATTGGAAAT GTAAATGAGG AAAATACCTA ATAAAAAATA TTAAAAAAAA AAAAAAAAGA
  AAATCCCTGT GACCTCAGTA AGGTCAGCTT GAATTATGT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321948713	CHEV_6_129130325	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222806549					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129157270 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	308 bp upstream
Gm53342	predicted gene, 53342	within coordinates
Gm68195	predicted gene, 68195	within coordinates
Rr368193	regulatory region 368193	30 bp upstream
Rr639386	regulatory region 639386	821 bp distal
Rr639387	regulatory region 639387	within coordinates
Rr639388	regulatory region 639388	164 bp proximal
Rr639389	regulatory region 639389	319 bp proximal
Rr639390	regulatory region 639390	1337 bp proximal
Tssr59096	transcription start site region 59096	306 bp upstream
Tssr59097	transcription start site region 59097	332 bp upstream
Tssr59098	transcription start site region 59098	610 bp upstream
Tssr59099	transcription start site region 59099	644 bp upstream
Tssr59100	transcription start site region 59100	668 bp upstream
Tssr59101	transcription start site region 59101	961 bp upstream
Tssr59102	transcription start site region 59102	1036 bp upstream
Tssr59103	transcription start site region 59103	1545 bp upstream
Tssr59104	transcription start site region 59104	1615 bp upstream