rs222807434 SNP Detail

Summary

• ID
  rs222807434
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:11711879 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGACAATG ACGTCATCCA
  TGGACTTTCC TGCAAGTTAG CAATTCCTTA GCCCTGAGTG TGTTTTAAAG CAAGATTTCC
  CAGTGATGGG CGTCTGACTC AGTCTCCTTG GAACTTGGTC ATAGTTATCC CACACAGACT
  TGAGCCTGGG GTTGGCTCTG TAGGGGTGTT ACGGGGCTTC ATTTATTCTT GGGTCCCCAC
  S
  CTCCATCTGT AAAGCTGGAG TGTGTTGGTA AATTCCTCTT AACTGGATAG CAAAGAATGG
  TCCTGAGATT TCAGAAATAG CCTGCAGATA TTCCAAATAG TCTGAAAGTG AATGTGGTTT
  CAGTCCAGCT CAGCTTAGAG GAAGCACCTC CTTGCCTAAA GTTCGGGCTC CACTGGTGCC
  ATCAACTGGC ACCTGAATCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353101783	MGP_WTSI_2_11628695	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222807434					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353101783	MGP_WTSI_2_11628695	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:11711879 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11206	CpG island 11206			782 bp distal
Il15ra	interleukin 15 receptor, alpha chain			Intron
				Noncoding-Transcript-Variant
Rr551843	regulatory region 551843			1210 bp distal
Rr551844	regulatory region 551844			1862 bp distal
Rr551845	regulatory region 551845			121 bp distal
Rr551846	regulatory region 551846			1361 bp proximal
Tssr16154	transcription start site region 16154			1722 bp downstream
Tssr16155	transcription start site region 16155			1693 bp downstream
Tssr16156	transcription start site region 16156			1667 bp downstream
Tssr16157	transcription start site region 16157			1620 bp downstream
Tssr16158	transcription start site region 16158			1604 bp downstream
Tssr16159	transcription start site region 16159			1301 bp downstream
Tssr16160	transcription start site region 16160			1236 bp downstream