rs222811103 SNP Detail

Summary

• ID
  rs222811103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:115713149 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATAT GCAGCTAGAG CCATGAGTCC
  Y
  ACCATGTGCA CTGTTTGGTT GGTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324840428	CHEV_14_115874959	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222811103					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:115713149 () rs orientation: forward

Symbol	Name	Function Class
Gpc5	glypican 5	within coordinates
Rr286822	regulatory region 286822	within coordinates
Rr294219	regulatory region 294219	1 bp distal
Rr297879	regulatory region 297879	1452 bp proximal
Tssr130199	transcription start site region 130199	1740 bp downstream
Tssr130200	transcription start site region 130200	1803 bp downstream
Tssr130201	transcription start site region 130201	1848 bp downstream
Tssr130202	transcription start site region 130202	1874 bp downstream
Tssr130203	transcription start site region 130203	1903 bp downstream