rs222818658 SNP Detail

Summary

• ID
  rs222818658
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:96511812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGTTTAGT TTAACTAGGG
  TTAAAATAAA AATATTCCCA GGAAATTAAT GGTCAATTTC TGGGAGTGAG ATTGCCTAAG
  CCACAGAAAC CAAGTTTTGT GTGCTTGTGT GTGTGTGTGT GTGTGTGTGT TTTAATCTGC
  AGACCCGAAT TTCACTTGGA GTGATATTTT TACCACACTG TTCACAGAAC CTTTGCTATG
  S
  ATCAGGTCAA AGCAGAAGGT AACTTACTCC TAAAAACAGC CCAACCCTAA ATCTCAACTC
  CAACAGAGCA CACTGTCTTC CCACAACACA ATCTGCTTTT ATAGATTCGC AAGGCTTCAA
  CAGTGTCTAG CATCAAGTCA CAGAAAAATA TAAAGTAGTA AAAATTTGAA AAACCTAATT
  AGTAGGGGAA GAAAATTCTA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323111046	CHEV_9_96530178	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222818658					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:96511812 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22167	CpG island 22167	684 bp proximal
Rasa2	RAS p21 protein activator 2	within coordinates
Rr684997	regulatory region 684997	1848 bp proximal
Tssr86611	transcription start site region 86611	1234 bp upstream
Tssr90973	transcription start site region 90973	866 bp downstream
Tssr90974	transcription start site region 90974	1112 bp downstream
Tssr90975	transcription start site region 90975	1423 bp downstream
Tssr90976	transcription start site region 90976	1728 bp downstream