rs222818699 SNP Detail

Summary

• ID
  rs222818699
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:115437260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGTAGGGT AACCTGTGTG
  TTCTTTTTTT TAAGATTTAT TTGTTTATTT TATGAGTACA CTGTAGCGAT ACACATGGTT
  GTAAGCCACC ATGTGGTGTC TGGGATTTGA ACTCAGGACC TTTGGAAGAG CAGTCAGCGC
  TCTTACCCGC TCAGCCATCT CACCAGCCCC AACCTGTGCG TTCTTTAAAT AATTATTTTG
  R
  TTTTTTTAAT CATGTATGTC TGTGTGCATG AAGGCAGAGA TCAGAGGAAT AGATTCCTTA
  GAGCTGGAGT TCTGTTGTGA AGCAACTGAC ACTGGCGCTG GAAATCAAAC TCCCGTCCTC
  TGAAACAACA ATACGCTCTT AACCCCTGAG TCACCTCTCC AGACCCTAAA ATCTGTGTAT
  TTTACTGTGT TGGTGTGAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320892531	CHEV_3_115346529	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222818699					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115437260 () rs orientation: forward

Symbol	Name	Function Class
Rr65100	regulatory region 65100	1141 bp proximal
Rr367536	regulatory region 367536	1173 bp downstream
Rr367537	regulatory region 367537	605 bp downstream
Rr397953	regulatory region 397953	881 bp upstream