rs222822243 SNP Detail

Summary

• ID
  rs222822243
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:58542978 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGAATCCTT GTTGTAAACG
  TGCTTAAACA TTATGAGTGG TTTTTGCAAA ATTTTCTGTA ACTGTATTGT GATATTCTCA
  GCCACGAACT TTGTAAATGA CAGCAACAAG GTATCCAAAT GTCAAAAAGG CAGGGTATGC
  CTGTTCAGCC TCAAATGCAT TTATACAACA TCTCCGATTT TTAAGATATT TTATGTAATA
  M
  AAACAAAATC ACCTCAACTG AAATTCCTAC CAAGACCTCC TAAGAGAATG TCCCCTTCTT
  TTCTGCAATT CCTCAGAAAA ACACTACCTA ACAGATACAC AAGAAAACTG CAATCTGGGA
  GGCTGACTAG ACAGCTCAGT GGCTAAAAGC ACGTGTCCTG CAAGCGTCAG AATGGGAACT
  GAGATCCTTG TAGTCATTTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349768689	MGP_WTSI_1_58560663	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222822243					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349768689	MGP_WTSI_1_58560663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:58542978 () rs orientation: forward

Symbol	Name	Function Class
Cpgi280	CpG island 280	615 bp proximal
Gm15834	predicted gene 15834	1327 bp upstream
Orc2	origin recognition complex, subunit 2	Intron
Rr396056	regulatory region 396056	1129 bp upstream
Rr411446	regulatory region 411446	170 bp distal
Rr411447	regulatory region 411447	62 bp proximal
Rr411448	regulatory region 411448	1143 bp proximal
Rr411449	regulatory region 411449	1280 bp proximal
Rr411450	regulatory region 411450	1349 bp proximal
Tssr6780	transcription start site region 6780	1316 bp upstream
Tssr11783	transcription start site region 11783	1100 bp downstream
Tssr11784	transcription start site region 11784	1127 bp downstream