rs222822410 SNP Detail

Summary

• ID
  rs222822410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:91343785 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GATGG TACTAGAGAT CTCTGGCCAC
  R
  CATTGGAGGT CGGCTCGGCG AGGTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325277496	CHEV_16_91547142	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222822410					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:91343785 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8455	CpG island 8455	within coordinates
Gm61328	predicted gene, 61328	836 bp upstream
Ifngr2	interferon gamma receptor 2	162 bp upstream
Rr325567	regulatory region 325567	within coordinates
Rr370129	regulatory region 370129	1103 bp downstream
Rr370130	regulatory region 370130	693 bp downstream
Rr392125	regulatory region 392125	1200 bp upstream
Tssr139405	transcription start site region 139405	1203 bp downstream
Tssr139406	transcription start site region 139406	1175 bp downstream
Tssr139407	transcription start site region 139407	151 bp upstream
Tssr139408	transcription start site region 139408	335 bp upstream
Tssr139409	transcription start site region 139409	932 bp upstream
Tssr142093	transcription start site region 142093	716 bp downstream
Tssr142094	transcription start site region 142094	1264 bp downstream
Tssr142095	transcription start site region 142095	1390 bp downstream