rs222826021 SNP Detail

Summary

• ID
  rs222826021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:46607088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGATATG GACACTCGTG
  AGACTTAGAA CAGCCACAAT AACCTTGGAA ATGAACAAAA AAGTTTGGCG AAATCGCAGC
  ATAATCAAGA TACAAACCAT AATCAAAATG AGACAACAGT AAGTGCTGGC GAGGACGTGG
  GGAACTCAGA ACTCCCCCGT ACCTATCTGC ACTGCTGTGG ACTGGAACAC AGTCTCAGCT
  Y
  CACAGGGCAG CTGTACTGAT GAATGCCTTT GATCCCAAGC CCTTGCTAGG CAGAGGCAGG
  AGAATCTTGG TGAGTTTGAG GCCAGCCTGG TCTAGATTTT TTTTTTGTAT TTTGTCTCAT
  TATGTAGCCC TGGCTGTCCA GAACTTTACT ATGTAGAGCA GGCTGGCCTC AACTCACAGA
  GAGCTACCTG TTTCTGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371217090	MGP_WTSI_7_54212710	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222826021					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371217090	MGP_WTSI_7_54212710	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46607088 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi19131	CpG island 19131			734 bp proximal
Gm39012	predicted gene, 39012			543 bp upstream
Rr646810	regulatory region 646810			417 bp proximal
Rr646811	regulatory region 646811			566 bp proximal
Rr646812	regulatory region 646812			1177 bp proximal
Rr646813	regulatory region 646813			1199 bp proximal
Rr646814	regulatory region 646814			1210 bp proximal
Tssr72574	transcription start site region 72574			1104 bp downstream
Tssr72575	transcription start site region 72575			1135 bp downstream
Uevld	UEV and lactate/malate dehyrogenase domains			Intron
				Noncoding-Transcript-Variant