rs222826839 SNP Detail

Summary

• ID
  rs222826839
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:66207222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCATTGGAA AAAAATGGAG
  AAAATACGCC ACAATGGGAG AGGCTATGTT TTCCTACTAG ATAAGGAGGT CCTTGGCCCT
  GGTGGGGCTG ATGCACCCAG GGTAGTTGGC AGCCAGGCAG TAGGCCAGCC TCCAAAAGAA
  GACAGGAAGT AAGTCAGTGT AGAGGGAAGG CAGCGGGCTG AACTGAGCAG CGTTGTCCTT
  R
  GAACAACAAC ACCACAGCGC CGGGAAACTT GGGAGACTAG CAGATTCTGA CCCGGAGTCC
  ATATTACCAG CAGACCTAGA GGGAGTCTGT TCTTAGCTTT ACTGAATAGA GGATCGCTTC
  TTTGAGGTCT GTATCAGGTC CATTTTACAG ATAAAGAAAC CAAGGCCGAG AGATTTAGGA
  CTTTTTATTG TCAAGGAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391367297	MGP_WTSI_14_66588610	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222826839					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391367297	MGP_WTSI_14_66588610	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:66207222 () rs orientation: forward

Symbol	Name	Function Class
Clu	clusterin	within coordinates
Cpgi6638	CpG island 6638	675 bp distal
Rr290025	regulatory region 290025	1222 bp distal
Rr297400	regulatory region 297400	within coordinates
Rr297401	regulatory region 297401	1378 bp proximal
Tssr126237	transcription start site region 126237	1263 bp downstream
Tssr126238	transcription start site region 126238	1249 bp downstream
Tssr126239	transcription start site region 126239	1234 bp downstream
Tssr126240	transcription start site region 126240	1215 bp downstream
Tssr126241	transcription start site region 126241	1206 bp downstream
Tssr126242	transcription start site region 126242	1176 bp downstream
Tssr126243	transcription start site region 126243	1166 bp downstream
Tssr126244	transcription start site region 126244	1148 bp downstream
Tssr126245	transcription start site region 126245	1122 bp downstream
Tssr126246	transcription start site region 126246	1116 bp downstream
Tssr126247	transcription start site region 126247	35 bp downstream
Tssr126248	transcription start site region 126248	within coordinates
Tssr126249	transcription start site region 126249	28 bp upstream
Tssr126250	transcription start site region 126250	755 bp upstream
Tssr126251	transcription start site region 126251	813 bp upstream
Tssr126252	transcription start site region 126252	821 bp upstream
Tssr126253	transcription start site region 126253	837 bp upstream
Tssr126254	transcription start site region 126254	855 bp upstream
Tssr126255	transcription start site region 126255	888 bp upstream
Tssr126256	transcription start site region 126256	1111 bp upstream
Tssr126257	transcription start site region 126257	1276 bp upstream
Tssr126258	transcription start site region 126258	1340 bp upstream
Tssr126259	transcription start site region 126259	1391 bp upstream
Tssr126260	transcription start site region 126260	1953 bp upstream