rs222828244 SNP Detail

Summary

• ID
  rs222828244
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:109189581 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTATTGACA CTCCTTTCCA
  CAGTTGAGCA CCTAGCATAT TTCAGTTTCC TAGATGGGGC TCTTTTGCTA TATTCTTTTC
  TTGTAGAGAA ATTATTTTGT AATTTCACAT TCTGTACATT CATGATTTTA TTTGATTTGC
  ACCTATTTTT TCCACTGAAT TTCATGACAC AAAGCCTGTA TTCATTTTTC CTCTTTTTTT
  K
  GGGGGGGGGG GGTAGGATGT ATGTGAGTAT TGGTTTGTGT GTGTGTTTAT ATGTGTGTTT
  CTATGTACAA GTGTGTATGT GTGTGTGTGT ACATGTGTAT ATGTGTGTAG ATATGTGTCA
  GTGTATCTGA GTGTATACAT GTGTGTATTT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT
  CTCTCTCTGT GTGTGTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321895517	CHEV_6_109162614	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222828244					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:109189581 () rs orientation: forward

Symbol	Name	Function Class
Gm32858	predicted gene, 32858	1622 bp upstream
Gm53303	predicted gene, 53303	within coordinates