rs222829547 SNP Detail

Summary

• ID
  rs222829547
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:121850127 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACGGCGCGT CCCGGCCCGG
  CTCCCGGCGG CTGCTCGGTG TCTGCGGGCC TCCCCGCCCC TTCGTCGTTG TCCTGCTGCC
  TCTGGCCCCC GCGGCCACGC CGGCCCGCGC CTGCCCGCCC GGCGTCCGCG CGTCCCCGCC
  GCGCTCCGGC GTCTCCTCCT CGGCGCGCCC GGCACCCGGC TGTCCCCGCC CGGCGTGCGA
  R
  CCGGTGTATG GGCCGCTCAC CATGTCGCTG AAGCCGCAGC CGCAGCCGCC CGCGCCCGCC
  ACTGGCCGCA AGCCCGGCGG CGGCCTGCTC TCGTCGCCCG GCGCCGCGCC GGCCTCGGCC
  GCGGTGACCT CGGCTTCCGT GGTGCCGGCC CCGGCCGCGC CGGTGGCGTC TTCCTCGGCG
  GCCGCGGGCG GCGGGCGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
ss366502173	MGP_WTSI_5_122162073	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	SWR/J	WSB/EiJ
rs222829547					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366502173	MGP_WTSI_5_122162073	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121850127 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
1700064N11Rik	RIKEN cDNA 1700064N11 gene			within coordinates
Atxn2	ataxin 2			Coding-Synonymous
				Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Cpgi16531	CpG island 16531			within coordinates
Rr619651	regulatory region 619651			610 bp distal
Rr619652	regulatory region 619652			445 bp distal
Rr619653	regulatory region 619653			within coordinates
Rr619654	regulatory region 619654			945 bp proximal
Rr619655	regulatory region 619655			1403 bp proximal
Tssr48591	transcription start site region 48591			205 bp downstream
Tssr48592	transcription start site region 48592			149 bp downstream
Tssr48593	transcription start site region 48593			14 bp downstream
Tssr48594	transcription start site region 48594			4 bp upstream
Tssr48595	transcription start site region 48595			403 bp upstream
Tssr53053	transcription start site region 53053			585 bp upstream