rs222837363 SNP Detail

Summary

• ID
  rs222837363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:140091724 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAACTAGCA CATGATCTGG
  TATCTCAGTA CTTAGTGTCT TAGTCCAGGA TGAAGAATGA GCCTTAAAAT GACTTCTTCA
  CACGCCAGAT GGATCACTGG GTAAAACTGT TTGGTGTGCA AGTAGAACCA CTTGAGTTCC
  AGCCCTGGAA CATATGGAAT CCACAGATTT TTGAAAATTG TTCTTTGATC TTTATGTGCA
  Y
  GCACGTGTGC ATGTGCACAC AATACACACG CACGCACACA CACACACACA CACACACACA
  CACACACACA CACACACACA CACCTCTGGT GACTTTCTGA CCAGAGCCCC TCATGTCTTT
  TGCCCTCTGG TGGCTGTGTA AGGAGTCAGG CCTTGGCTAC TTGGCTTTTG TTTAGCAGAT
  CTGTCAGTCA ATCTGTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320528556	CHEV_2_140075540	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222837363					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:140091724 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr566094	regulatory region 566094			117 bp proximal
Sel1l2	sel-1 suppressor of lin-12-like 2 (C. elegans)			Intron
				Noncoding-Transcript-Variant