rs222843901 SNP Detail

Summary

• ID
  rs222843901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36475201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACCtttaa ggcagggtca catgtatccc
  aggctagttt ccaactcatt atgtagccaa ggatggcctg aactcctgat cttcctgtct
  ccacttcccc aatgctgaca gttcatttta gccaccgcaa ctggctAACT tgtattcctc
  R
  ttgctacatt tccagagcct gatataaccc ctggcacatg gctgttactc tgcaaacgtg
  ttggatatgt ggatTTAATG TCTCCCTACC TTTACCCTTA GTGTGTCCCA TACTACATTA
  TCCTTGGCTT ATTTTTTAAA TAGAAATGCA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325584551	CHEV_18_36501802	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222843901					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36475201 () rs orientation: forward

Symbol	Name	Function Class
Gm41696	predicted gene, 41696	1097 bp downstream
Rr536102	regulatory region 536102	12 bp proximal
Rr536103	regulatory region 536103	691 bp proximal
Rr536104	regulatory region 536104	1377 bp proximal
Tssr150615	transcription start site region 150615	780 bp upstream
Tssr150616	transcription start site region 150616	796 bp upstream
Tssr150617	transcription start site region 150617	933 bp upstream