rs222848080 SNP Detail

Summary

• ID
  rs222848080
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:101898170 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCAACCCTG CCTGCTACAG
  ACTGCTTCCC CTTGCCTAAC CACAGTGTCA CCCACCGCAG GTTCCCTTCA TTCTGCCGGC
  TTCTGCTCTG GGCCTTCTCA AGGCTGAGGG CAGTTATTTT GTCTCTAAGA GATAAAGAAC
  ACCAAAACTT GCATGTTCAC GGGCGTGTGC ACATGTTTAA TCATCTCCAT CATCGGGAGG
  Y
  TGCAGCCAGC ATCTCTAAGC TAAAGACGTT TGAAAAAGGC TCTCAAACTC AGCAAGTTTA
  AAGCAGTTTC TGACACCAAA GCTAGATTAC AGACCAAGGG AAGGAGACGG ACTGAGGGCG
  GCAGGGAAGA TAGAAACAAA ATGGGGAGAT ATGTGTGTGG TAGTCAGAGG CTGAACAACA
  GGCAGGGCAG GGTAAATGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322353644	CHEV_7_109397477	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222848080					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:101898170 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19524	CpG island 19524	679 bp proximal
Rhog	ras homolog family member G	within coordinates
Rr652561	regulatory region 652561	1432 bp distal
Rr652562	regulatory region 652562	within coordinates
Rr652563	regulatory region 652563	1115 bp proximal
Rr652564	regulatory region 652564	1958 bp proximal
Tssr2354	transcription start site region 2354	1296 bp upstream
Tssr68327	transcription start site region 68327	1205 bp downstream
Tssr68328	transcription start site region 68328	657 bp upstream
Tssr68329	transcription start site region 68329	739 bp upstream
Tssr68330	transcription start site region 68330	1257 bp upstream
Tssr73938	transcription start site region 73938	1876 bp upstream
Tssr73939	transcription start site region 73939	399 bp downstream
Tssr73940	transcription start site region 73940	449 bp downstream
Tssr73941	transcription start site region 73941	491 bp downstream
Tssr73942	transcription start site region 73942	579 bp downstream
Tssr73943	transcription start site region 73943	1112 bp downstream
Tssr73944	transcription start site region 73944	1123 bp downstream
Tssr73945	transcription start site region 73945	1164 bp downstream
Tssr73946	transcription start site region 73946	1360 bp downstream
Tssr73947	transcription start site region 73947	1503 bp downstream
Tssr73948	transcription start site region 73948	1528 bp downstream
Tssr73949	transcription start site region 73949	1564 bp downstream
Tssr73950	transcription start site region 73950	1613 bp downstream