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rs222853109 SNP Detail
Summary
  • ID
    rs222853109
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48041003 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTCAGGGTCT TGATATAGGC
AGCTTCTTGA AGGGGTGGGG GCCATGGGAA GAAGGCATGC TTGGAGGCCC ACTCACTCCT
AAGTGGGAGT GAGTAGAGGA TGCTAAATCC TGTTGGAATT TAAGCACAGA CTGAGGAGGG
CTGGCACACC CTAGGCTTGA GGGCACGAAG TGCTCCACTC ACTAGCCTGT CCTCTATGTC
Y
TGCCTCCCCT TGCAGCCACA CACACCCGCT ACAACCCCAG CAAGTCCTCC ACCTACTACA
CTCAAGGGCA GACCTTCTCC CTGCAGTACG GCACCGGCAG CCTTACCGGC TTCTTCGGCT
ATGACACTCT GAGAGTGAGT CAAATTCCCT ACTCCTGGGT GGGGCATGGG AGGAAGATGA
GGGCCTTAGG CGAAGCCCCC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398352960 MGP_WTSI_17_47867027 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222853109 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398352960 MGP_WTSI_17_47867027 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48041003 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 631 bp proximal
Tssr5147 transcription start site region 5147 1327 bp downstream
Tssr5148 transcription start site region 5148 765 bp upstream
Tssr5149 transcription start site region 5149 1405 bp upstream
Tssr145004 transcription start site region 145004 1336 bp downstream
Tssr145005 transcription start site region 145005 1315 bp downstream
Tssr145006 transcription start site region 145006 1286 bp downstream
Tssr145007 transcription start site region 145007 1254 bp downstream
Tssr145008 transcription start site region 145008 1233 bp downstream
Tssr145009 transcription start site region 145009 1205 bp downstream
Tssr145010 transcription start site region 145010 823 bp downstream
Tssr145011 transcription start site region 145011 804 bp downstream
Tssr145012 transcription start site region 145012 787 bp downstream
Tssr145013 transcription start site region 145013 735 bp downstream
Tssr145014 transcription start site region 145014 2 bp upstream
Tssr145015 transcription start site region 145015 64 bp upstream
Tssr145016 transcription start site region 145016 75 bp upstream
Tssr145017 transcription start site region 145017 520 bp upstream
Tssr145018 transcription start site region 145018 532 bp upstream
Tssr145019 transcription start site region 145019 563 bp upstream
Tssr145020 transcription start site region 145020 584 bp upstream
Tssr145021 transcription start site region 145021 610 bp upstream
Tssr145022 transcription start site region 145022 642 bp upstream
Tssr145023 transcription start site region 145023 669 bp upstream
Tssr145024 transcription start site region 145024 780 bp upstream
Tssr145025 transcription start site region 145025 1124 bp upstream
Tssr145026 transcription start site region 145026 1380 bp upstream
Tssr148459 transcription start site region 148459 1277 bp upstream
Tssr148460 transcription start site region 148460 1225 bp upstream
Tssr148461 transcription start site region 148461 1213 bp upstream
Tssr148462 transcription start site region 148462 1170 bp upstream
Tssr148463 transcription start site region 148463 797 bp upstream
Tssr148464 transcription start site region 148464 712 bp upstream
Tssr148465 transcription start site region 148465 43 bp downstream
Tssr148466 transcription start site region 148466 56 bp downstream
Tssr148467 transcription start site region 148467 551 bp downstream
Tssr148468 transcription start site region 148468 582 bp downstream
Tssr148469 transcription start site region 148469 672 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory