rs222875914 SNP Detail

Summary

• ID
  rs222875914
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:119728903 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTCTGAGG GAGACCCACT
  CTTGTTCGCG TCGCCGAAGC CGACACGTGG ATCTTGAGAA GTTAGGGCTC ACTTATGCTC
  AGTCTGTGGG TGTTGTTGAG CTTGCCAAGC TTGCGTGTCC AAGTGCTTGG TCAACTCTGC
  CTGTCTTGCT GGCTTTTTGC GCACGACGCT GCTGCAGTTA AGGTGCAGGA GAGTAGCGAG
  R
  GGACTGCTGG GAAATGGGCT GGCGGGGTGA CTAGTTGTGT AGTCTCCAAG GTAACCGAAA
  GCGGCTGAAC AGCCTTAGGA ACACAGGGTT CCGCCTGGCT GCACGTGATC CTTGGGACTC
  TACCCTGGAA GAGTTTTCTT TGCGACATTT TTTTCATGTT TGTGGCTAGC TGAAAAGCGA
  GTAACTGGAG GCTGTTTTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355438437	MGP_WTSI_2_119724158	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222875914					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355438437	MGP_WTSI_2_119724158	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119728903 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930485G23Rik	RIKEN cDNA 4930485G23 gene			33 bp upstream
Cpgi12132	CpG island 12132			573 bp distal
Cpgi12133	CpG island 12133			within coordinates
Gm75581	predicted gene, 75581			within coordinates
Gm75585	predicted gene, 75585			1265 bp upstream
Mga	MAX gene associated			Intron
				Noncoding-Transcript-Variant
Rr563600	regulatory region 563600			1276 bp distal
Rr563601	regulatory region 563601			1184 bp distal
Rr563602	regulatory region 563602			within coordinates
Rr563603	regulatory region 563603			1813 bp proximal
Tssr19669	transcription start site region 19669			1130 bp downstream
Tssr19670	transcription start site region 19670			831 bp downstream
Tssr25831	transcription start site region 25831			1265 bp upstream
Tssr25832	transcription start site region 25832			47 bp upstream