rs222875937 SNP Detail

Summary

• ID
  rs222875937
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:45111629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGGGGGA AGAAAGAGAT
  TTCCCATGAA GGGATGCTAA GGCGCTCCTG GGCTTATAAC CCCAGCACTC AGGAACCCTA
  GGAAGGAGGG CTGTAAGCCT AATGCCAACC TGTGAAGTTT ATTGAGATCC TCACTCAGAA
  AACAAAACTT AGGGCCAGCA AGATAGCTCA TGCACAAAAG GACACACACG CGCGCGCGCG
  Y
  GCGCGCAAAT GTAAAAAGTA TCCCACTCAA CCCACGATCC CAAAATGGGA AAACAAAACA
  AAATGAAAAC AAAACAAAAC AAAACAAAAT AAAAAACCAA AAACCCGTGA TTAACATCTG
  GAAGTGGTAG CCCATAGCAG TAATCTCAGC ACTTGAGAAG GTAAGACTGA AGACCACATG
  TTTGGACTAG TATGGGCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371177671	MGP_WTSI_7_52717575	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222875937					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371177671	MGP_WTSI_7_52717575	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:45111629 () rs orientation: forward

Symbol	Name	Function Class
Bax	BCL2-associated X protein	Intron
Gm10252	predicted gene 10252	1905 bp downstream
Gm73429	predicted gene, 73429	742 bp upstream
Gm73431	predicted gene, 73431	555 bp downstream
Rr380754	regulatory region 380754	773 bp downstream
Rr646450	regulatory region 646450	1831 bp distal
Rr646452	regulatory region 646452	1186 bp distal
Rr646453	regulatory region 646453	753 bp distal
Rr646454	regulatory region 646454	256 bp distal
Rr646455	regulatory region 646455	834 bp proximal
Tssr66542	transcription start site region 66542	1105 bp downstream
Tssr72399	transcription start site region 72399	1259 bp upstream
Tssr72400	transcription start site region 72400	1228 bp upstream