rs222879175 SNP Detail

Summary

• ID
  rs222879175
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:104226545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAGGAGAG ATTGCGGAGG
  CTGGATCGCC ATTCTCTGCT CAGAGGCCTC CTAAAGGATG CCACAATGCC TCCCAGTGCC
  AAACTCCGGA GGTGAGAGCA TCCTTGCCAC TGCTTCCCCC TTCTCTGATT TCCTTGTGGA
  GCTGGCCCAT TAGACACACT TTCACAATGT TGATGGTTTT GAATGAAGGC TTTGTGGGGG
  Y
  TCTACTGACA CTTCCCAACA CTTAACATGT TTGCAAAGTA ATCATATAAA TTAAAGGTGG
  CTTACGTTCA GAACCTTCTA ATTATCCAGT TCACGCTTGT ACATTCATGT GCCAATTATG
  GGTCTTCGGG AAATCCATAA AATTATAAAC CATCCCACCC CCTGAATTAG CACCCATTGT
  TTTTTATTAT CTCCAAGATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362684546	MGP_WTSI_4_104041953	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222879175					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362684546	MGP_WTSI_4_104041953	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:104226545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14517	CpG island 14517	917 bp distal
Cpgi14518	CpG island 14518	347 bp distal
Dab1	disabled 1	within coordinates
Rr376948	regulatory region 376948	within coordinates
Rr596452	regulatory region 596452	1748 bp distal
Rr596453	regulatory region 596453	within coordinates
Rr596454	regulatory region 596454	685 bp distal
Rr596455	regulatory region 596455	234 bp proximal
Tssr38124	transcription start site region 38124	1988 bp downstream
Tssr38125	transcription start site region 38125	1756 bp downstream
Tssr38126	transcription start site region 38126	1724 bp downstream
Tssr38127	transcription start site region 38127	1715 bp downstream
Tssr38128	transcription start site region 38128	1706 bp downstream