rs222879465 SNP Detail

Summary

• ID
  rs222879465
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:91260855 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGAAAACT AAAAGCTTAG
  TCCCGCTGCG CCTTTCCACC TCCCTAGACA GAATGGGAGA GCTAAATAAG CCCCGGAGTA
  CCTGTGCGAG GTGCTATACC CTGCTTCAGA TGTGAAGTAG GAAATCCTGC ACTCGACCCT
  GCATGCACCT GCCCTGAACC ACATCCTCCC AGTGCCCTCA CACCAGCCCC GCACAGGCCC
  W
  GCTCCGAGGG GGCGTCCGAG TGCTGACCAT CCCCAACCTG CTCCCTCACT CAGATAAATC
  TCTTTTACCC AAAAAAACCT GCGCCTGCTC TGGACCCAGA CCCAAGATCT GGAGACAGAG
  CCGCACACGT TTTTTTACAC CTGCTTGGCG GCTTAATTAC CAGAGCACCT GTCGTACAGG
  GTTTTTTTTT TTTTTTTCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362388952	MGP_WTSI_4_91039309	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222879465					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362388952	MGP_WTSI_4_91039309	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:91260855 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14444	CpG island 14444	12 bp distal
Cpgi14445	CpG island 14445	277 bp proximal
Cpgi14446	CpG island 14446	1732 bp proximal
Elavl2	ELAV like RNA binding protein 1	within coordinates
Mir6402	microRNA 6402	666 bp downstream
Rr595258	regulatory region 595258	595 bp distal
Rr595259	regulatory region 595259	952 bp distal
Rr595260	regulatory region 595260	59 bp distal
Rr595261	regulatory region 595261	327 bp proximal
Rr595262	regulatory region 595262	1345 bp proximal
Tssr42416	transcription start site region 42416	646 bp upstream
Tssr42417	transcription start site region 42417	618 bp upstream
Tssr42418	transcription start site region 42418	571 bp upstream