rs222896956 SNP Detail

Summary

• ID
  rs222896956
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:76900055 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGACAGT GGAAAAGAGA
  TTTTCCCAAA ACCAGAAGAA AATGGACTGG GACTTAGGAG ACCTGAGCAT GACCCGGCAG
  AGCTGACGAA GGCCACTTTG CACCTCTGGG CTCCAGGGTA ACACTGCCCA GAGCCCTGTC
  CCCAGGGGTG TGGGTGGATG CCACACTATG CTCCCCTCTT CTGTTCTCTG CTAACCTAGA
  R
  CACTGCACAC GCTACTTGCT ACACAACACT GGGTCCCAGC TTGGTGGGCT GGACAGTGGG
  AGCCCATGGC TCAGCCCTGG AAGCCTAGCT CCTTGTACTT GGCGGCAATG TCATTCCGGA
  AGAGCTCCAG GGCCTTGCTC ATGGCGCCCT GAGCATCTGC TCCAAAGTCC CCGGAATGTC
  TCTTCTTCAG GACTTCAATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394626485	MGP_WTSI_15_76846285	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222896956					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394626485	MGP_WTSI_15_76846285	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76900055 () rs orientation: forward

Symbol	Name	Function Class
Gm49540	predicted gene, 49540	within coordinates
Gm52199	predicted gene, 52199	795 bp upstream
Mb	myoglobin	mRNA-UTR
Rr504916	regulatory region 504916	1962 bp distal
Rr504917	regulatory region 504917	1461 bp distal
Rr504918	regulatory region 504918	369 bp distal
Tssr131853	transcription start site region 131853	68 bp downstream
Tssr131854	transcription start site region 131854	17 bp downstream
Tssr131855	transcription start site region 131855	66 bp upstream
Tssr131856	transcription start site region 131856	157 bp upstream
Tssr131857	transcription start site region 131857	1776 bp upstream
Tssr131858	transcription start site region 131858	1852 bp upstream
Tssr135064	transcription start site region 135064	204 bp downstream
Tssr135065	transcription start site region 135065	1789 bp downstream