rs222897062 SNP Detail

Summary

• ID
  rs222897062
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:54729886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGAAGGA TTATCAGGAA
  GTCTGAAATC AGCTCGGTCC ACCTAGCAAG AATCAGGTCT TTGGGCTGGG CAGTGGTGGT
  GCATGCCTTT AATCCCAGCA CTTGGGAAGC AGAGGCAGAG GCAGATGGAT TTCTGAGTTT
  GAGGCCAGCC TGGTCTACAG AGTGAGTACC AGGACAGCCA GGGCTACACA GAGAACCCCC
  Y
  CCCAAAAAAG AATCAGGTCT TTGGCACCTT TAATAAATGC TTGGGACCCT TGCCAGCTCT
  TAGGTTTGTA CAGATTTTAT TTCAGATGCT GTCTGTGGCT TCTATTGTCT TCTCTCACTG
  TGAGGCACTT AAGAGGAGGT GGCAGGTGGT GTTAGTACCC TCTCCCCACT GACAGGGTAA
  GATAAATGTT CCTTTTCCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss368369903	MGP_WTSI_6_54702895	EVA_MGPV3	EVA_MGPV3	f	SNP	C	T	C	C	C	C	T	C	C	T	C	C	T	T	T	C	T	C	T	T	T	C	T	C
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57L/J	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	PWK/PhJ	QSi5/Ianm	RIIIS/J	SEA/GnJ	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs222897062					SNP	C	T	C	C	C	C	T	C	C	T	C	C	T	T	T	C	T	C	T	T	T	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368369903	MGP_WTSI_6_54702895	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:54729886 () rs orientation: forward

Symbol	Name	Function Class
Gm66973	predicted gene, 66973	within coordinates
Rr140760	regulatory region 140760	within coordinates
Tssr61090	transcription start site region 61090	999 bp upstream