rs222898290 SNP Detail

Summary

• ID
  rs222898290
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:155427663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ggttactta acttctccga gctgagattt
  cctcatctct gtggctgtga aggttaaatg agtcagcagt tccaaagtaa ttagaataaa
  gcccgacaca caatgagtgt tcaataaatg acagttaACT GCACACTGCA TGCTGCCTGC
  R
  CCTCCCAGTC CAATGACATT CCTTAAATTT ATTCTCTGTT ACAGACTCCA ACTAAACCCA
  CACTCCAAAG GTGAGAGCCT CTGGCTGAGA GCCATGTCAA GACCGCCCTG GCATAGAGCA
  GGGTGTGGTT CGGAATAAAT TCACGGGGCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320574361	CHEV_2_155411479	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222898290					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:155427663 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gss	glutathione synthetase			Intron
				Noncoding-Transcript-Variant
Rr568067	regulatory region 568067			1250 bp distal
Rr568068	regulatory region 568068			1395 bp distal
Rr568069	regulatory region 568069			within coordinates
Rr568070	regulatory region 568070			726 bp proximal