rs222899962 SNP Detail

Summary

• ID
  rs222899962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:94968259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGGAGTA TTTCTCCTGC
  CCACCCGCCT CCTCTCATCC TGTTCCCTGC TGGAAGCGGC TCCTCCGCAA AGCCAGACAG
  ATATTTAGTG GTGGTGATGA CAACCCATCA GAAATAATAA TTAGCAAAGG GCAGCCTTTG
  TCTCGAAGCA GTGAATGGGA CCTCAGCCCC CACAGGTGTG ATGCTGGGTG GAGACAGGTG
  R
  GCTTGACTCA AAGATCTCAC TATCCGAGGA AGAATTAGGG AACTCCAAGA GTGTATGGAA
  TGTTGTTTTG GTCTAACTCA GATTTCCCCT AATGCAGAAC AAGACTCATT TTCCCTGAGC
  ATCGTTTTCT ACATGTTTTT ATAATTAAAT AAGAACAGCA CATGCAGCAG GCACTATGCT
  AACTGCTTTA CAAATACTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323817654	CHEV_11_94938747	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222899962					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:94968259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3575	CpG island 3575	148 bp distal
Gm53645	predicted gene, 53645	within coordinates
Gm57362	predicted gene, 57362	within coordinates
Itga3	integrin alpha 3	632 bp upstream
Rr454944	regulatory region 454944	1777 bp distal
Rr454945	regulatory region 454945	995 bp distal
Rr454946	regulatory region 454946	1259 bp distal
Rr454947	regulatory region 454947	993 bp distal
Rr454948	regulatory region 454948	730 bp distal
Rr454949	regulatory region 454949	462 bp distal
Rr454950	regulatory region 454950	62 bp distal
Rr454951	regulatory region 454951	203 bp proximal
Rr454952	regulatory region 454952	707 bp proximal
Rr454953	regulatory region 454953	1729 bp proximal
Tssr3652	transcription start site region 3652	817 bp upstream
Tssr104346	transcription start site region 104346	482 bp downstream
Tssr110254	transcription start site region 110254	844 bp upstream
Tssr110255	transcription start site region 110255	778 bp upstream
Tssr110256	transcription start site region 110256	711 bp upstream
Tssr110257	transcription start site region 110257	615 bp upstream