rs222900250 SNP Detail

Summary

• ID
  rs222900250
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:130553870 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGAGATGGA GAATGACCCA GGGCAATAGG
  ACAGCATCCA CACGGGAACC TTGAGGTAAC CGTGGTTGGT TGAAAGAGGT GAAATGGTGT
  ATATGACtgt cttagtcagg gtttctattc ctgcacaaaa catcatgacc aagaagcaag
  Y
  tgggaaggaa agggtttatt cagcttacat ttccacattg ctgttcatca tcaaaggaag
  tcagaactgg aactcacaca ggtcaggaag caggagctga tgcagaggcc atggagggat
  gttacttact ggcttgcttc ccctggcttg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321318882	CHEV_4_130382474	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222900250					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:130553870 () rs orientation: forward

Symbol	Name	Function Class
Gm26716	predicted gene, 26716	246 bp upstream
Sdc3	syndecan 3	241 bp downstream
Tssr39293	transcription start site region 39293	681 bp downstream
Tssr39294	transcription start site region 39294	521 bp downstream
Tssr39295	transcription start site region 39295	356 bp downstream
Tssr39296	transcription start site region 39296	328 bp downstream