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rs222906307 SNP Detail
Summary
  • ID
    rs222906307
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr2:33107420 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CTTCAGCATG AGATAACATT
    TCCAAACAGA AATTCTCTGC TGATCCCTCC CCTCTCCCTG TGACATCCGT GTCACGGGTC
    AGCTATTGCC TCTGCTGTGG GATTAGGAGA GTTCCCAGAG GCCAGTGTTG TTACTCAGAA
    AAAGATCCCT TTGAGGAAGA CTGAGAACAC AAGTTCCAAA GCTAGCTCAG TGCTCTCCAC
    R
    TGGGTTCTTC CAAGTACAGG CCTAGTATGG CAGCGATTAT GAGCTGGCTC CTGTCTGAAC
    TCTGTTAAGT GGCAGATCAC AGCTTTTCTA AACCTCAGTT TCCTGATCTG TGAAAAAGAG
    GGCTGAGAGC CCAGCTCAGC AACAGCCCAG CAGACACCTG CAGCAACCCC ACAACACACA
    TCTAACTACC TCCATCTCCC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss353573040 MGP_WTSI_2_33072928 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222906307 SNP A A A A A A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A A A A A A G A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss353573040 MGP_WTSI_2_33072928 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:33107420 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Angptl2 angiopoietin-like 2 Intron
Ralgps1 Ral GEF with PH domain and SH3 binding motif 1 Intron
Noncoding-Transcript-Variant
Rr555182 regulatory region 555182 1329 bp distal
Rr555183 regulatory region 555183 1320 bp distal
Rr555184 regulatory region 555184 within coordinates
Rr555185 regulatory region 555185 1707 bp proximal
Rr555186 regulatory region 555186 1980 bp proximal
Tssr17381 transcription start site region 17381 1387 bp downstream
Tssr17382 transcription start site region 17382 1374 bp downstream
Tssr17383 transcription start site region 17383 1324 bp downstream
Tssr17384 transcription start site region 17384 1302 bp downstream
Tssr17385 transcription start site region 17385 1284 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory