rs222912060 SNP Detail

Summary

• ID
  rs222912060
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48713316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTGAGATAG ATTACTGTAG
  AGACTCTGAA CTTCTTGCAC AGTTGCTTTC GTAGTCTTTT GCAGATTTAG GGCCATTATT
  ATTATTATTA TTATCATTAT TATCATTATT ATCATTATTA TTACTAGACT TTTCTTAAAG
  GCACATGCCA CCATCCCAGA ACTAGGGAGA CAGAGGCAGA GAGGGTTCAA GGCCAGCCTG
  R
  TTTAGAGAGT GAGTTCCAGG ACAGCCAGAC TTACACAGAG AAACCTTGTC TCAAAAAACC
  AAAAACGAAA AAAATATACA TGTCTCTCCT ATTAAAGAGG CATAGAGGGG GGCAAGCTTC
  TTCCTCCTTG CCCTCCCTAC AATCATAGTG CTCTAGAGAT TGACACTGGG CATAAATCAA
  GAAGCTCAAT CTTGAATGAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664653	CHEV_11_48635991	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222912060					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48713316 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2780	CpG island 2780	737 bp distal
Cpgi2781	CpG island 2781	1701 bp proximal
Gm74096	predicted gene, 74096	within coordinates
n-TGacc1	nuclear encoded tRNA glycine 1 (anticodon ACC)	1239 bp upstream
Rr446122	regulatory region 446122	879 bp proximal