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rs222916701 SNP Detail
Summary
  • ID
    rs222916701
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr17:48041595 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CCATAAGTGC TGATCCTTGA
AAAAGAATAT GTCTCCTGCC AGACTCATCA AGGTGGGGTG GGGACTTGAG TGGGGAGAGG
GTCTTCAGTG TGGGTAGTCA CTGTCCTGTG TTTTAATCTC CATCCCCAGG TCCAAAGCAT
CCAGGTCCCT AACCAGGAGT TCGGCCTGAG TGAGAATGAG CCTGGCACCA ATTTTGTCTA
Y
GCCCAATTTG ACGGGATCAT GGGCCTGGCC TACCCCGGCC TGTCTTCAGG GGGCGCCACC
ACCGCCTTGC AGGGCATGTT GGGGGAGGGC GCTCTGTCCC AGCCCCTCTT CGGTGTCTAC
CTTGGCAGGT AAGCAACCAC TTAGCAAGCC CTCAGGTCTG CTACTCAGCT GAGGTTCACT
AGTTTGAGGG TTGGCGGCTT                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss398352977 MGP_WTSI_17_47867619 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222916701 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss398352977 MGP_WTSI_17_47867619 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:48041595 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Pgc progastricsin (pepsinogen C) within coordinates
Rr528106 regulatory region 528106 39 bp proximal
Tssr5147 transcription start site region 5147 1919 bp downstream
Tssr5148 transcription start site region 5148 1357 bp upstream
Tssr5149 transcription start site region 5149 813 bp upstream
Tssr145004 transcription start site region 145004 1928 bp downstream
Tssr145005 transcription start site region 145005 1907 bp downstream
Tssr145006 transcription start site region 145006 1878 bp downstream
Tssr145007 transcription start site region 145007 1846 bp downstream
Tssr145008 transcription start site region 145008 1825 bp downstream
Tssr145009 transcription start site region 145009 1797 bp downstream
Tssr145010 transcription start site region 145010 1415 bp downstream
Tssr145011 transcription start site region 145011 1396 bp downstream
Tssr145012 transcription start site region 145012 1379 bp downstream
Tssr145013 transcription start site region 145013 1327 bp downstream
Tssr145014 transcription start site region 145014 533 bp downstream
Tssr145015 transcription start site region 145015 518 bp downstream
Tssr145016 transcription start site region 145016 514 bp downstream
Tssr145017 transcription start site region 145017 65 bp downstream
Tssr145018 transcription start site region 145018 59 bp downstream
Tssr145019 transcription start site region 145019 28 bp downstream
Tssr145020 transcription start site region 145020 within coordinates
Tssr145021 transcription start site region 145021 18 bp upstream
Tssr145022 transcription start site region 145022 50 bp upstream
Tssr145023 transcription start site region 145023 77 bp upstream
Tssr145024 transcription start site region 145024 188 bp upstream
Tssr145025 transcription start site region 145025 532 bp upstream
Tssr145026 transcription start site region 145026 788 bp upstream
Tssr145027 transcription start site region 145027 1721 bp upstream
Tssr145028 transcription start site region 145028 1749 bp upstream
Tssr145029 transcription start site region 145029 1790 bp upstream
Tssr148459 transcription start site region 148459 1869 bp upstream
Tssr148460 transcription start site region 148460 1817 bp upstream
Tssr148461 transcription start site region 148461 1805 bp upstream
Tssr148462 transcription start site region 148462 1762 bp upstream
Tssr148463 transcription start site region 148463 1389 bp upstream
Tssr148464 transcription start site region 148464 1304 bp upstream
Tssr148465 transcription start site region 148465 543 bp upstream
Tssr148466 transcription start site region 148466 509 bp upstream
Tssr148467 transcription start site region 148467 38 bp upstream
Tssr148468 transcription start site region 148468 1 bp upstream
Tssr148469 transcription start site region 148469 80 bp downstream
Tssr148470 transcription start site region 148470 1757 bp downstream
Tssr148471 transcription start site region 148471 1776 bp downstream
Tssr148472 transcription start site region 148472 1792 bp downstream
Tssr148473 transcription start site region 148473 1809 bp downstream
Tssr148474 transcription start site region 148474 1828 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory