rs222923317 SNP Detail

Summary

• ID
  rs222923317
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:116677069 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTACCCAGG CGGCTGAGCT
  ATGCTGGCCT CTTAGTCTGC ACCTGCAACA GGTGCTCCCT AGAGAGGTCA GCACAAAGGA
  AGATTTGTAT CAAATTCCTT CCTCAACAAC AGAATCATTC ATTCAGGGTA CATTTCACCT
  GTAATGAAAC TTCAGAAAGT AAAAGGACTA ACAGTCACAA AACTTGAAGG GTGGGTGGGA
  R
  GGAAATGCAG GAAGACACAG AGGCTCAGGA GTGTGGTTGC CTTACGACCG GATTCCTTTA
  TTGATATTAC CTAGACATTT TAGGGGTTCT TGCTGTTCTA AATCCCATCT CAGATACTGT
  TTGGGATGAA GATCACACCT GACCCTGAGG GAACTAGAGC CTTTCTATCT GGGTGTAGTT
  CTGTGGAGGT GTGGTCCAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362957232	MGP_WTSI_4_116492477	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222923317					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362957232	MGP_WTSI_4_116492477	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:116677069 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14642	CpG island 14642	680 bp proximal
Hpdl	4-hydroxyphenylpyruvate dioxygenase-like	35 bp downstream
Mutyh	mutY DNA glycosylase	432 bp downstream
Rr597993	regulatory region 597993	1825 bp proximal
Tssr42929	transcription start site region 42929	1008 bp downstream
Tssr42930	transcription start site region 42930	1033 bp downstream
Tssr42931	transcription start site region 42931	1600 bp downstream
Tssr42932	transcription start site region 42932	1616 bp downstream
Tssr42933	transcription start site region 42933	1629 bp downstream