rs222942270 SNP Detail

Summary

• ID
  rs222942270
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:43356005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGCAGC GGAGGGAGCG
  AGGCTGCCGG CGGCTGGGAG CGGGGTGCGG CGAGCCCCGC CGCCAGGGGG CGCGGCACCC
  TCCCGGGCCG TTCCACGGCG CTCCGTGGTT CCCGCTGCCC GGCTGGAGGC GGGTCCAGCG
  CGGCGCTCTG GGTGTGCACC CCAGCGAGCG CGAGGCCTTC CTGGCGGGCG GTGGAGCCGG
  S
  CCGGGGCGCT CGCCGCCCCT CGTGACTTGT GCCCGCCACG ATCGACGTAA TTTCCCACGC
  AGACTTGGCT CGGGCTGTGA GGCGCGGAGT TGTGAAGGCC TTGTGGGCTG GGACTCAACT
  CATCTGAGTT CTTTTTTTCT TTTTTTTTTA AGTTTGTCCT AAAGTAGAAG TTTGATCGCT
  CAGGTGGCCC GCTTGGGAGT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss380192163	MGP_WTSI_10_43199815	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs222942270					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G	G	G	G	C	G	G	G	G	C	G	G	G	G	G	G	C	G	G	G	G	G	G	G	C	G	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380192163	MGP_WTSI_10_43199815	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:43356005 () rs orientation: forward

Symbol	Name	Function Class
Bend3	BEN domain containing 3	within coordinates
Cpgi1500	CpG island 1500	within coordinates
Rr224738	regulatory region 224738	within coordinates
Rr384594	regulatory region 384594	1632 bp downstream
Tssr93131	transcription start site region 93131	1358 bp downstream
Tssr93132	transcription start site region 93132	1146 bp downstream
Tssr93133	transcription start site region 93133	815 bp downstream
Tssr93134	transcription start site region 93134	760 bp downstream
Tssr93135	transcription start site region 93135	680 bp downstream
Tssr93136	transcription start site region 93136	655 bp downstream