rs222942466 SNP Detail

Summary

• ID
  rs222942466
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:70704746 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTCTTAGGT GCTTATCTCT
  GTACACCAGA AACCTTAAGA AGCAACCAGT ATTGAGAGAC TCATTTATGA AAGTCTAAAA
  CTGGATACAA CCAAAATGTC CACCAACAGT TAAATTATGA CATGTTCACA ATTGAGCTAT
  TACTTAATAA GGAGAATTAA TAAAATAAAA CTTAAGAGCA TAGTTTAATC TCATAAACAA
  K
  ATAATAAGCA AAACAAAACA TTTTTTCATC CATGTAAGTT TAAAAGCAGG TAAAATTTAA
  AATTAAGAGA GACATAAGTT TTGAGGTAGC AAGATGGAAA CTCTGGGGCT TGGGGAATGT
  TCTGTCTCTC TGTATGGGAT GTGAAAGTTA CTATTGTGGA ATTGGGATCT ATGTTCTTCC
  TGTATATATT GTATACTTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321815815	CHEV_6_70677756	CHEVERUD	SCREENING_POP	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222942466					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:70704746 () rs orientation: forward

Symbol	Name	Function Class
Gm30211	predicted gene, 30211	1451 bp upstream
Gm68839	predicted gene, 68839	796 bp upstream
Igk	immunoglobulin kappa chain complex	1008 bp downstream
Igkc	immunoglobulin kappa constant	1008 bp downstream
Rr158	regulatory region 158	1811 bp distal
Rr150202	regulatory region 150202	within coordinates
Rr399685	regulatory region 399685	1915 bp downstream
Rr399686	regulatory region 399686	951 bp downstream
Tssr1880	transcription start site region 1880	911 bp downstream
Tssr56956	transcription start site region 56956	1929 bp downstream
Tssr56957	transcription start site region 56957	1290 bp downstream
Tssr56958	transcription start site region 56958	1274 bp downstream
Tssr56959	transcription start site region 56959	1256 bp downstream
Tssr56960	transcription start site region 56960	1241 bp downstream
Tssr56961	transcription start site region 56961	1225 bp downstream
Tssr56962	transcription start site region 56962	1213 bp downstream
Tssr56963	transcription start site region 56963	1166 bp downstream
Tssr56964	transcription start site region 56964	1155 bp downstream
Tssr56965	transcription start site region 56965	1143 bp downstream
Tssr56966	transcription start site region 56966	1135 bp downstream
Tssr56967	transcription start site region 56967	1115 bp downstream
Tssr56968	transcription start site region 56968	1085 bp downstream
Tssr56969	transcription start site region 56969	1061 bp downstream
Tssr56970	transcription start site region 56970	1042 bp downstream
Tssr56971	transcription start site region 56971	1030 bp downstream
Tssr56972	transcription start site region 56972	971 bp downstream
Tssr56973	transcription start site region 56973	960 bp downstream
Tssr56974	transcription start site region 56974	930 bp downstream
Tssr56975	transcription start site region 56975	893 bp downstream
Tssr61321	transcription start site region 61321	1253 bp upstream
Tssr61322	transcription start site region 61322	1105 bp upstream
Tssr61323	transcription start site region 61323	1024 bp upstream
Tssr61324	transcription start site region 61324	947 bp upstream
Tssr61325	transcription start site region 61325	914 bp upstream
Tssr61326	transcription start site region 61326	901 bp upstream
Tssr61327	transcription start site region 61327	875 bp upstream
Tssr61328	transcription start site region 61328	797 bp upstream