rs222942896 SNP Detail

Summary

• ID
  rs222942896
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:123620665 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACAGTAA ACTGTCTACA
  ACATCAGGTG TGAGCTAACT AGCAGGAAGT AGGCAAACAG GGAGGGAGTG ACAAATGGAA
  GTTATGTCCT GTTCTTCCAC TAGGTAGCCT CTTAAGTTAC CAAAGACTTT TCTTTCATAG
  AAAGGTTGCA GGGATTGACA GTAGGTCTTA CCCCAGCCCC ACTCATTAGT AAACAGCTGT
  Y
  TGCAGCTGAG GCAGAAACTC TAGTTTATAA TCACAGATGG GCTCTAGGCT GACACGTGAG
  CTTTGGTGCC ACTGTAGGGA ACTTAGCCTG TATTTGGACT CCTGCTGTCC ATATGCAGAG
  CTGAAGCCTT CATGTAGTAG TTGCTTTTTC CTAGACCTCT GTTTGGTTCC TGAGTGTGTG
  TGTGTGTGTG TGTGTGTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323234326	CHEV_9_123700718	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222942896					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:123620665 () rs orientation: forward

Symbol	Name	Function Class
Fyco1	FYVE and coiled-coil domain containing 1	within coordinates
Tssr92157	transcription start site region 92157	454 bp downstream
Tssr92158	transcription start site region 92158	469 bp downstream
Tssr92159	transcription start site region 92159	477 bp downstream
Tssr92160	transcription start site region 92160	870 bp downstream
Tssr92161	transcription start site region 92161	887 bp downstream