rs222943857 SNP Detail

Summary

• ID
  rs222943857
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:30208857 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACGATGAG CCACAGCTGT
  GGCTTCCCAG CTCCTGCTCC CCATTGGGTT TCAGCCCTCC GTGTGTTCCC TAGCTCACTT
  GTGTTGGAGT ACGTAAGTAG TCTAGGATTG AGGAAGTCTG GGTAGAACTG AAAAAACCCT
  GCACACACTC CTGACAGCTT CCTTAGCAGT TGGTTATTTA CCTCGCAGAT TTTAACAAGC
  R
  CAAGCCTCTC CTGGTCCTAT AAATAAAACT GTCAAGCCAA CCATCCACTT AGAGTGCCCT
  CTTCAATTAG CCATCAAGTG TTTCTGACCC TCTTATGCAC ACCTCTTAAA CAGTGGGTCT
  CCCCCTGGCC TGCCTGTACT TCCTCATTCC TCAACTCGTG GCAAACTAAC CACACACACA
  CACACACACA CACAGAGAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325129945	CHEV_16_30390125	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222943857					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:30208857 () rs orientation: forward

Symbol	Name	Function Class
Atp13a3	ATPase type 13A3	1183 bp upstream
Cpgi8159	CpG island 8159	512 bp distal
Gm61087	predicted gene, 61087	within coordinates
Gm61089	predicted gene, 61089	331 bp upstream
Rr370076	regulatory region 370076	509 bp downstream
Rr514223	regulatory region 514223	1520 bp distal
Rr514224	regulatory region 514224	1150 bp distal
Rr514225	regulatory region 514225	1141 bp distal
Rr514226	regulatory region 514226	342 bp distal
Rr514227	regulatory region 514227	within coordinates
Tssr140714	transcription start site region 140714	1338 bp upstream
Tssr140715	transcription start site region 140715	1237 bp upstream
Tssr140716	transcription start site region 140716	1181 bp upstream
Tssr140717	transcription start site region 140717	691 bp upstream