rs222952020 SNP Detail

Summary

• ID
  rs222952020
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:3284118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGAGGTT TACAAGTTTG
  GAAACTGAGG CTCTGTTTCA AAAAGACAAA AAAAAAAAAA AAAAAAAAAA AAAAAAGTAA
  AAAAGCAAAA CATCTTTAAT CTCAGCAGGC AGGAGGTGAG TTACCTCAAT CTGTAAGGCA
  GAGTGAGACT GTGTGTCAAA ACATTCCACT ATTGAAAAAG GTCCCTAGCC CCTGGTCTTA
  R
  CCCCTGGTCT TGAAGTCTCA TATTGGGGCT TAAATGTCAT CAGTGGGGTG TCTTCTAGCG
  TAGGGAGAAG AAAATAAATC ATTACAGAAG AAAACCCATT TGCCACTCCT TACAAGATAT
  GAAAGTATAA GAGACTGCTT GGGAAGCAAG GACAAACTTG CAGCCCCATG GGACAAGTCT
  GTCATAATCA GTGACATGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss382239575	MGP_WTSI_11_3234121	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222952020					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382239575	MGP_WTSI_11_3234121	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3284118 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2477	CpG island 2477	1398 bp distal
Gm74265	predicted gene, 74265	within coordinates
Pik3ip1	phosphoinositide-3-kinase interacting protein 1	Intron
Rr402384	regulatory region 402384	1562 bp downstream
Rr402385	regulatory region 402385	1728 bp upstream
Rr441529	regulatory region 441529	1799 bp distal
Rr441530	regulatory region 441530	579 bp proximal
Rr441531	regulatory region 441531	1319 bp proximal
Tssr3406	transcription start site region 3406	1630 bp downstream
Tssr100049	transcription start site region 100049	1658 bp downstream
Tssr100050	transcription start site region 100050	1634 bp downstream
Tssr100051	transcription start site region 100051	1607 bp downstream
Tssr106460	transcription start site region 106460	1842 bp upstream
Tssr106461	transcription start site region 106461	1817 bp upstream
Tssr106462	transcription start site region 106462	130 bp downstream
Tssr106463	transcription start site region 106463	1694 bp downstream