rs222952358 SNP Detail

Summary

• ID
  rs222952358
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24600334 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTGAAATCT CAACAGCATC CACGTTAAGC CCGAGAGTTG
  CTAGGAATTT GAAGCCAGCA CGGACTACAT AGTGAGTTCT GAGTGAACAA AACAAATAGG
  R
  ATTTGATTCT TAGAGCTAGA TGTATCGTCA GGAACCGAGC CTAGTACCCT TTACTCAAGA
  AGGTGAGTCT AAATCCAGTA TACAGCCGAA TGTATTCTA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495661	CHEV_5_23901154	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs222952358					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24600334 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	within coordinates
Cpgi15597	CpG island 15597	580 bp distal
Rr112283	regulatory region 112283	1734 bp distal
Rr112284	regulatory region 112284	867 bp proximal
Rr124925	regulatory region 124925	within coordinates
Rr398998	regulatory region 398998	1627 bp downstream
Rr398999	regulatory region 398999	866 bp downstream
Tssr45411	transcription start site region 45411	1672 bp downstream
Tssr45412	transcription start site region 45412	906 bp downstream