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rs222954837 SNP Detail
Summary
  • ID
    rs222954837
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr13:98830595 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TGCCTCAGTC TGGTAAATGG
    GAGTACAAGA CCTCACTGTA GCTCTCACGA ACACAATCCA AAGTCAGGAA GGACATAGTC
    AAACACAGAA AACTTTCAAA CATATTCTGC CATTCACATT CATGATCCTC TGACGGAGCT
    CACAGCTGCA AGACCAAGAT CATCTTGCCA GGCTCGTGGG TAAGGAAGGT GAGTTTGGGT
    R
    ATGGAAGGAG ATGGGTGACA TTGCTGTCCT AGGAAGTGCT TTTCCCAGGG AGAGTGTGAT
    AGAATCAGAA GGAAGTGGAG AAAAAAAAAA GAAGAAGAAG AAGAAGAAGA AGAAGACGCA
    GAGGAGTGAA GGATGCATTT CTCTCAAACT TGCAAAAGCC ACATTTCATG GTGATGCTAA
    GATGGAAGAC TTAAAGCATC                                            
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss389656827 MGP_WTSI_13_99464042 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs222954837 SNP G G G G G G G G G G G G G G G G G G G A G G A G G G G A G G G G G G G G G G G G A G G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss389656827 MGP_WTSI_13_99464042 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98830595 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6012 CpG island 6012 611 bp proximal
Rr281821 regulatory region 281821 within coordinates
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 1765 bp downstream
Tssr123632 transcription start site region 123632 1902 bp upstream
Tssr123633 transcription start site region 123633 1870 bp upstream
Tssr123634 transcription start site region 123634 1362 bp upstream
Tssr123635 transcription start site region 123635 1353 bp upstream
Tssr123636 transcription start site region 123636 1300 bp upstream
Tssr123637 transcription start site region 123637 1280 bp upstream
Tssr123638 transcription start site region 123638 942 bp upstream
Tssr123639 transcription start site region 123639 682 bp downstream
Tssr123640 transcription start site region 123640 719 bp downstream
Tssr123641 transcription start site region 123641 738 bp downstream
Tssr123642 transcription start site region 123642 806 bp downstream
Tssr123643 transcription start site region 123643 937 bp downstream
Tssr123644 transcription start site region 123644 1473 bp downstream
Tssr123645 transcription start site region 123645 1597 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory