rs222954837 SNP Detail

Summary

• ID
  rs222954837
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98830595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCAGTC TGGTAAATGG
  GAGTACAAGA CCTCACTGTA GCTCTCACGA ACACAATCCA AAGTCAGGAA GGACATAGTC
  AAACACAGAA AACTTTCAAA CATATTCTGC CATTCACATT CATGATCCTC TGACGGAGCT
  CACAGCTGCA AGACCAAGAT CATCTTGCCA GGCTCGTGGG TAAGGAAGGT GAGTTTGGGT
  R
  ATGGAAGGAG ATGGGTGACA TTGCTGTCCT AGGAAGTGCT TTTCCCAGGG AGAGTGTGAT
  AGAATCAGAA GGAAGTGGAG AAAAAAAAAA GAAGAAGAAG AAGAAGAAGA AGAAGACGCA
  GAGGAGTGAA GGATGCATTT CTCTCAAACT TGCAAAAGCC ACATTTCATG GTGATGCTAA
  GATGGAAGAC TTAAAGCATC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss389656827	MGP_WTSI_13_99464042	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222954837					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389656827	MGP_WTSI_13_99464042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98830595 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	611 bp proximal
Rr281821	regulatory region 281821	within coordinates
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	1765 bp downstream
Tssr123632	transcription start site region 123632	1902 bp upstream
Tssr123633	transcription start site region 123633	1870 bp upstream
Tssr123634	transcription start site region 123634	1362 bp upstream
Tssr123635	transcription start site region 123635	1353 bp upstream
Tssr123636	transcription start site region 123636	1300 bp upstream
Tssr123637	transcription start site region 123637	1280 bp upstream
Tssr123638	transcription start site region 123638	942 bp upstream
Tssr123639	transcription start site region 123639	682 bp downstream
Tssr123640	transcription start site region 123640	719 bp downstream
Tssr123641	transcription start site region 123641	738 bp downstream
Tssr123642	transcription start site region 123642	806 bp downstream
Tssr123643	transcription start site region 123643	937 bp downstream
Tssr123644	transcription start site region 123644	1473 bp downstream
Tssr123645	transcription start site region 123645	1597 bp downstream