rs222956615 SNP Detail

Summary

• ID
  rs222956615
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:36414341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCACGCACG GAGCGCCGGG
  TTACGCGCCG ACGTCTGGCT GCCACGACTC GCCGTGGCGG CGGCGAGCGG ATCCCGCTAG
  GGAAGGAGGA GAGAGAGGGA GAGAGAGAGA GCTGACGGGG GCTGTGAGTG AGCGGGAGGA
  GCGGGGTGTC AGCCCGGCCG GCCCGCGGGA GTGAAAGGCA GAGCGAACGA GGCCCCGAGC
  Y
  CGCCGCGCGG CCGCCGCCTC CGCCTCCTCC CCTCCCCTCG CGCGCGGCCC GCCCCCGCCC
  GCAGCCCGCC CTCCTCGCGG CTCAGCCCGC AGAGCCCGAG CGAGGCGCCG TTCGGCTCGC
  GCGCCGTCCA GAACAGGTGT GCGCGCGCCT CCCCCCTCCC TCCCTCCTCC TCCTCGCGCC
  CGCCTGCGCG CGCCGGCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400274444	MGP_WTSI_18_36440942	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222956615					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400274444	MGP_WTSI_18_36440942	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:36414341 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9864	CpG island 9864	within coordinates
Gm58393	predicted gene, 58393	307 bp upstream
Pura	purine rich element binding protein A	within coordinates
Rr536081	regulatory region 536081	318 bp distal
Rr536082	regulatory region 536082	181 bp distal
Rr536083	regulatory region 536083	within coordinates
Tssr150596	transcription start site region 150596	721 bp downstream
Tssr150597	transcription start site region 150597	137 bp downstream
Tssr150598	transcription start site region 150598	60 bp upstream
Tssr150599	transcription start site region 150599	101 bp upstream
Tssr150600	transcription start site region 150600	158 bp upstream
Tssr150601	transcription start site region 150601	177 bp upstream
Tssr150602	transcription start site region 150602	223 bp upstream
Tssr152929	transcription start site region 152929	299 bp upstream