rs222960496 SNP Detail

Summary

• ID
  rs222960496
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19040651 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGGCCTCAA GACACCCCCA
  GACTCCTCCT TACCGCCTGA AGTCGATCTG TCAGCTCCCT CCGACGGTTC CTGCACTTAG
  CTGCAGCCAG CTTGTTCCGC TCTCTGCGAA CCCTTCGCTT TTCTTCTTCT TCTGGGGTAA
  GCTGAGTCAG AGATAAGGAC CATGAGATCT GGGGGTACCT CTATCAGCCC TAAGAAAACT
  Y
  CTTCCTCCTG AACCCCAAAT AATAACCCCT ACTCCTCACT GGCCAGAATG GTAAAGTTCC
  TTCAGACTTG AGGCCTCAGA GGAACCTCCA ACTATTAAGT GACAAAATTA CTGTCACTTT
  CTCTTACTTC CCTCACCCAC CTCCCCCCAA GGCCAACTTT TGAAAATAAT GATCTCTTGC
  AGTGCAGGCT GGACTCCATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370746354	MGP_WTSI_7_19892075	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs222960496					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370746354	MGP_WTSI_7_19892075	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19040651 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18466	CpG island 18466	1359 bp distal
Cpgi18467	CpG island 18467	614 bp proximal
Cpgi18468	CpG island 18468	1534 bp proximal
Fosb	FBJ osteosarcoma oncogene B	within coordinates
Rr400143	regulatory region 400143	1717 bp upstream
Rr643087	regulatory region 643087	1040 bp distal
Rr643088	regulatory region 643088	1460 bp proximal
Tssr2107	transcription start site region 2107	689 bp downstream
Tssr64825	transcription start site region 64825	1927 bp downstream
Tssr64826	transcription start site region 64826	511 bp upstream
Tssr64827	transcription start site region 64827	603 bp upstream
Tssr70900	transcription start site region 70900	467 bp downstream