rs222964352 SNP Detail

Summary

• ID
  rs222964352
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:70599287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGGGCCCCT GCAGCATCAT
  AGCTGGGCAC AGGTGGACCT TTGGCCATCT CCAAACGGCC AGGGGGTTTC TCGGGGCAGT
  GACGAGAGCA AGGGGCGGCC AGAGTGTGGT GCTGCGGGAG CAGAGGGCAG AGCAGCTGAG
  CTCGACCTCA CTTTTCTCAT GCCAGAGGCC GAGGCCTGCG GGAACCTCGG GGCCACCTCT
  M
  CAAAGTCCTT GGAGATGCAC TTCAGCTCCG CGAGGGCGGT GCGGGAGGTG GGTTGGAGAG
  AAAGACATTA TTCTGTGTTT TGCCTTCACA GCAGGCGACC GCGGGTTGTT CTGTTTGAAT
  GAATGAGCCC AGAGGCCGCG CCCAATGGGC ACGGGCAGCT GCTTAATATG CATGAGGCCT
  GCAGCCAATG GCCAGGCGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss403745388	MGP_WTSI_X_68808856	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs222964352					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403745388	MGP_WTSI_X_68808856	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:70599287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22757	CpG island 22757	within coordinates
Gm61711	predicted gene, 61711	within coordinates
Hmgb3	high mobility group box 3	236 bp upstream
Rr406104	regulatory region 406104	within coordinates
Rr691784	regulatory region 691784	within coordinates
Rr691785	regulatory region 691785	320 bp proximal
Tssr161165	transcription start site region 161165	298 bp upstream
Tssr161166	transcription start site region 161166	344 bp upstream
Tssr161167	transcription start site region 161167	383 bp upstream
Tssr161168	transcription start site region 161168	628 bp upstream
Tssr161169	transcription start site region 161169	1193 bp upstream